Eric Banks 2c3c680eb7 Misc changes and cleanup from all previous commits in this push. ... 1. By default, do not include the UG CEU callset for assessment. 2. Updated md5s that are different now with all the HC changes.		2013-06-11 12:53:11 -04:00
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java	Misc changes and cleanup from all previous commits in this push.	2013-06-11 12:53:11 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00