gatk3的最后一个经典版本3.8

Eric Banks 2c3c680eb7 Misc changes and cleanup from all previous commits in this push. ... 1. By default, do not include the UG CEU callset for assessment. 2. Updated md5s that are different now with all the HC changes.		2013-06-11 12:53:11 -04:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Misc changes and cleanup from all previous commits in this push.	2013-06-11 12:53:11 -04:00
public	Reworking of the dangling tails merging code.	2013-06-11 12:53:04 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00