gatk3的最后一个经典版本3.8

Mark DePristo 2c38310868 Create LIBS using new AlignmentStateMachine infrastructure ... -- Optimizations to AlignmentStateMachine -- Properly count deletions. Added unit test for counting routines -- AlignmentStateMachine.java is no longer recursive -- Traversals now use new LIBS, not the old one		2013-01-11 15:17:17 -05:00
licensing	Cleaning CRLF terminations in the licenses	2013-01-10 17:06:29 -05:00
protected/java	Create LIBS using new AlignmentStateMachine infrastructure	2013-01-11 15:17:17 -05:00
public	Create LIBS using new AlignmentStateMachine infrastructure	2013-01-11 15:17:17 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Updating to latest google caliper code	2013-01-11 15:17:16 -05:00