Mauricio Carneiro 2bb9525e7f Don't set base qualities if fastQ is provided ... * Pacbio Processing pipeline now works with the new fastQ files outputted by the Pacbio instrument		2012-01-23 17:57:29 -05:00
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R	queueJobReport now compresses PDF when running R 2.13+.	2012-01-10 17:32:30 -05:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	Device files like /dev/null are now tracked as special by Queue and are not used to generate .out file paths, scattered into a temporary directory, gathered, deleted, etc.	2012-01-23 16:17:04 -05:00
packages	Revved Picard to incorporate tfennell's AsyncSAMFileWriter.	2011-12-06 10:37:42 -05:00
perl	Update to the bindings for liftOverVCF.pl (to -V from -B)	2011-09-15 15:33:09 -04:00
scala	Don't set base qualities if fastQ is provided	2012-01-23 17:57:29 -05:00
testdata	Data Processing Pipeline Test	2011-12-12 00:24:51 -05:00