gatk3的最后一个经典版本3.8

Mauricio Carneiro 2bb9525e7f Don't set base qualities if fastQ is provided ... * Pacbio Processing pipeline now works with the new fastQ files outputted by the Pacbio instrument		2012-01-23 17:57:29 -05:00
public	Don't set base qualities if fastQ is provided	2012-01-23 17:57:29 -05:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Changes to allow for external tests	2012-01-19 13:04:24 -05:00
ivy.xml	No more "Q-<pid>@<host>". Generated log file names now use the first output + ".out" (ex. my.vcf.out) or the name of the first QScript plus the order the function was added (ex. MyScript-1.out). The same function added twice with the same outputs will now have the same default logs, meaning the 2nd instance of the function won't be added to the graph twice.	2012-01-08 12:11:55 -05:00