aaron ad1fc511b1 intermediate commit for some changes in the Variation system, so Eric can go ahead with his changes. Everything is pretty set, but the Variation interface could use a convenience method that joins all the alternate alleles. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1903 348d0f76-0448-11de-a6fe-93d51630548a		2009-10-23 06:31:15 +00:00
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ReferenceOrderedDataTest.java	added the ability to pass in a csv file of ROD triplets (one triplet per line) to the -B option	2009-08-11 22:10:20 +00:00
RodGLFTest.java	A big fix for MergingSamRecordIterator, where we weren't correctly handling the comparisons of SAMRecords correctly (we weren't applying the new reference index first, so sometimes the MT contig would be ID 23, sometimes 24 in different records).	2009-10-02 19:35:35 +00:00
RodVCFTest.java	ensure that in the indel case we don't allow identification as both an insertion and deletion at the same location in the VCF ROD	2009-10-19 18:21:00 +00:00
TabularRODTest.java	Changing the carpet under your feet!! New incremental update to th eROD system has arrived.	2009-09-21 16:55:22 +00:00
rodDbSNPTest.java	intermediate commit for some changes in the Variation system, so Eric can go ahead with his changes. Everything is pretty set, but the Variation interface could use a convenience method that joins all the alternate alleles.	2009-10-23 06:31:15 +00:00