38 lines
1.3 KiB
C
38 lines
1.3 KiB
C
/* DO NOT EDIT THIS FILE - it is machine generated */
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#include <jni.h>
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/* Header for class org_broadinstitute_sting_alignment_bwa_BWACAligner */
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#ifndef _Included_org_broadinstitute_sting_alignment_bwa_BWACAligner
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#define _Included_org_broadinstitute_sting_alignment_bwa_BWACAligner
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#ifdef __cplusplus
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extern "C" {
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#endif
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/*
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* Class: org_broadinstitute_sting_alignment_bwa_BWACAligner
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* Method: create
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* Signature: (Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;Ljava/lang/String;)J
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*/
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JNIEXPORT jlong JNICALL Java_org_broadinstitute_sting_alignment_bwa_BWACAligner_create
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(JNIEnv *, jobject, jstring, jstring, jstring, jstring, jstring, jstring, jstring);
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/*
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* Class: org_broadinstitute_sting_alignment_bwa_BWACAligner
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* Method: destroy
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* Signature: (J)V
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*/
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JNIEXPORT void JNICALL Java_org_broadinstitute_sting_alignment_bwa_BWACAligner_destroy
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(JNIEnv *, jobject, jlong);
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/*
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* Class: org_broadinstitute_sting_alignment_bwa_BWACAligner
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* Method: align
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* Signature: (J[B)[Lorg/broadinstitute/sting/alignment/Alignment;
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*/
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JNIEXPORT jobjectArray JNICALL Java_org_broadinstitute_sting_alignment_bwa_BWACAligner_align
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(JNIEnv *, jobject, jlong, jbyteArray);
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#ifdef __cplusplus
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}
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#endif
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#endif
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