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hanna c9a3707cfd Initial version of BWA/C bindings. Still lots of squirrels roaming the code. 
- Some cigar strings aren't right.
- Memory leaks.
- BWA codebase changes aren't committed to BWA tree.
- Aligner interface butchered to support BWA/C-style alignments.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1928 348d0f76-0448-11de-a6fe-93d51630548a
 		2009-10-28 21:37:49 +00:00
..
bwa_as_lib.sh Initial version of BWA/C bindings. Still lots of squirrels roaming the code. 2009-10-28 21:37:49 +00:00
bwa_gateway.cpp Initial version of BWA/C bindings. Still lots of squirrels roaming the code. 2009-10-28 21:37:49 +00:00
bwa_gateway.h Initial version of BWA/C bindings. Still lots of squirrels roaming the code. 2009-10-28 21:37:49 +00:00
org_broadinstitute_sting_alignment_bwa_BWACAligner.cpp Initial version of BWA/C bindings. Still lots of squirrels roaming the code. 2009-10-28 21:37:49 +00:00
org_broadinstitute_sting_alignment_bwa_BWACAligner.h Initial version of BWA/C bindings. Still lots of squirrels roaming the code. 2009-10-28 21:37:49 +00:00