gatk-3.8/scala/qscript
rpoplin 55eb0387ac Another relevant qscript. I use this one to do thousands of variant recalibration jobs to search for optimal parameters.
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5019 348d0f76-0448-11de-a6fe-93d51630548a
2011-01-19 18:17:32 +00:00
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examples Command lines for locally run Queue jobs no longer have to be escaped differently than bsub'ed jobs. 2011-01-10 21:07:29 +00:00
lib Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires. 2010-12-15 03:33:36 +00:00
oneoffs Another relevant qscript. I use this one to do thousands of variant recalibration jobs to search for optimal parameters. 2011-01-19 18:17:32 +00:00
playground Refactoring the qscript directory; oneoffs, playground, and core 2011-01-19 15:23:40 +00:00