hanna af31d02a2d Fix concurrency issue that periodically kills VariantEvalIntegrationTest -- ... a member field of RMDTrackBuilder was getting rebuilt every time it was called, creating concurrency issues. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5001 348d0f76-0448-11de-a6fe-93d51630548a		2011-01-14 18:52:21 +00:00
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ReferenceOrderedDataPoolUnitTest.java	Fix concurrency issue that periodically kills VariantEvalIntegrationTest --	2011-01-14 18:52:21 +00:00
SAMBAMDataSourceUnitTest.java	Improved BAQ implementation. Now supports adding BAQ tags to reads on the fly with ADD_TAG_ONLY option. Caching fasta reader implementation, and changes throughout the system to enable this. Many performance improvements throughout the system due to better reference access patterns.	2010-12-05 18:29:39 +00:00