aaron 2b7d39035a switched over the FastaAlternateReferenceWalker to the Variation system ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1726 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-25 16:09:43 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	switched over the FastaAlternateReferenceWalker to the Variation system	2009-09-25 16:09:43 +00:00
test/org/broadinstitute/sting	changes to add VCF to the rod system, fix VCF output in VariantsToVCF, and some other minor changes	2009-09-24 15:16:11 +00:00