Mark DePristo 2b601571e7 Better error handling in NanoScheduler ... -- The previous nanoscheduler would deadlock in the case where an Error, not an Exception, was thrown. Errors, like out of memory, would cause the whole system to die. This bugfix resolves that issue		2012-12-05 14:49:22 -05:00
..
alignment	Part II of GSA-462: Consistent RODBinding access across Ref and Read trackers	2012-08-30 10:15:10 -04:00
commandline	I have pulled out all of the documentation URLs and put them into the HelpUtils class as static variables; this way, Appistry can change links as needed to point commercial users to their own internal forum without having to muck things up all over our source. Added some TODOs for Geraldine to update links in the GATK docs that still point to the old wiki. Sorry that I am pushing into stable, but that's what Appistry is pulling from for their release next week (and unstable has been failing forever).	2012-11-27 10:26:17 -05:00
gatk	Merge branch 'master' of github.com:broadinstitute/gsa-unstable	2012-12-05 02:00:39 -05:00
jna	Add walltime changes to LSF	2012-11-29 15:23:37 -05:00
queue	Queue now understands -nct and requests the appropriate number of cores from LSF, SGE, etc	2012-10-25 17:26:58 -04:00
utils	Better error handling in NanoScheduler	2012-12-05 14:49:22 -05:00