gatk-3.8/perl
ebanks 598974ae10 perl script to make batching jobs easier
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1638 348d0f76-0448-11de-a6fe-93d51630548a
2009-09-16 19:02:46 +00:00
..
1kgScripts some fixes 2009-09-15 01:35:36 +00:00
DistributedMake.pm A useful, rule-based parallel job dispatcher. 2009-08-31 15:40:21 +00:00
StingArgs.pm A useful perl module for quick argument parsing. 2009-08-31 15:44:57 +00:00
batchGATKjobsWithRegExp.pl perl script to make batching jobs easier 2009-09-16 19:02:46 +00:00
enqueueGATKcallerJobs.pl Some useful scripts for running only individual parts of the pilot1/2 cleaning/calling pipeline 2009-09-11 17:38:33 +00:00
randomSampleFromStream.pl A little gadget to select random samples from input stream(s) of unknown length. By default, selects a single line (with probability 1/TOTAL_NUMBER_OF_LINES_READ), with -N option randomly selects specified number of lines. Can read from STDIN or from arbitrary number of input streams (all streams will be merged). Examples:\n cat file1 file2 file3 | randomSampleFromStream.pl -N 5 \n\n or \n randomSampleFromStream.pl file1 file2 file3 2009-07-31 18:55:14 +00:00
sortByRef.pl Now you can specify '-' instead of input file name, and the script will read from stdin 2009-08-14 20:30:56 +00:00
splitAndEnqueueGATKjobs.pl 2nd stab at creating a pipeline [not quite finished yet]. 2009-09-13 05:53:18 +00:00