Geraldine Van der Auwera 2b83dd7c5b Added TreeReduce interface to VariantFiltration		2016-11-14 17:19:44 -05:00
..
VectorPairHMM	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
c	After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.	2014-05-19 17:36:41 -04:00
chainFiles	The contig is named MT not M in b36. Delivers PT68890442.	2014-04-08 10:03:47 -04:00
doc	Updated readme in public/doc to just point to the website	2015-03-12 11:52:48 -04:00
external-example	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
gatk-engine	Replace SAMFileReader with calls to SamReaderFactory	2016-10-14 11:22:54 -04:00
gatk-queue	Replace SAMFileReader with calls to SamReaderFactory	2016-10-14 11:22:54 -04:00
gatk-queue-extensions-generator	Replace SAMFileReader with calls to SamReaderFactory	2016-10-14 11:22:54 -04:00
gatk-queue-extensions-public	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
gatk-root	Remove sra group	2016-09-23 17:39:10 -04:00
gatk-tools-public	Added TreeReduce interface to VariantFiltration	2016-11-14 17:19:44 -05:00
gatk-utils	BaseCountsBySample counting bases at a particular position	2016-11-08 13:31:05 -05:00
gsalib	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
java/config	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
package-tests	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00
repo	Move htsjdk and picard to version 2.3.0	2016-05-16 14:50:00 -04:00
src/main	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
pom.xml	Update pom versions to mark the start of GATK 3.7 development	2016-06-01 17:21:48 -04:00