Mauricio Carneiro 2ad4d2f0bb Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/stable		2011-06-29 16:06:14 -04:00
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chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	Might as well check for the illegal state and throw an exception	2011-06-29 15:59:10 -04:00
packages	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
scala	Making the BQSR pipeline publicly available and supported.	2011-06-29 16:05:32 -04:00
testdata	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00