Guillermo del Angel 2ab270cf3f Corner case fix to General Ploidy SNP likelihood model. ... -- In case there are no informative bases in a pileup but pileup isn't empty (like when all bases have Q < min base quality) the GLs were still computed (but were all zeros) and fed to the exact model. Now, mimic case of diploid Gl computation where GLs are only added if # good bases > 0 -- I believe general case where only non-informative GLs are fed into AF calc model is broken and yields bogus QUAL, will investigate separately.		2013-04-23 21:13:18 -04:00
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src/org/broadinstitute/sting	Corner case fix to General Ploidy SNP likelihood model.	2013-04-23 21:13:18 -04:00
test/org/broadinstitute/sting	After debate reverting SW parameter changes temporarily while we explore global SW plans.	2013-04-23 13:32:06 -04:00