carneiro 5974675b43 Two intermediate commits, to work over the weekend. ... ReplicationValidationWalker: Just the skeleton of what will be the implementation of the replication/validation model. dataProcessingV2: Committing an UNTESTED implementation of BWA alignment. I am running tests on it over the weekend. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5900 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-27 22:03:08 +00:00
..
core	Added the R script for VQSR	2011-05-27 21:56:56 +00:00
examples	When /etc/mailname is unreadable fall back to the hostname.	2011-04-11 20:22:44 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
oneoffs	Two intermediate commits, to work over the weekend.	2011-05-27 22:03:08 +00:00
playground	Switched arguments from short name to long name.	2011-05-25 17:24:56 +00:00