carneiro 5974675b43 Two intermediate commits, to work over the weekend. ... ReplicationValidationWalker: Just the skeleton of what will be the implementation of the replication/validation model. dataProcessingV2: Committing an UNTESTED implementation of BWA alignment. I am running tests on it over the weekend. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5900 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-27 22:03:08 +00:00
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qscript	Two intermediate commits, to work over the weekend.	2011-05-27 22:03:08 +00:00
src/org/broadinstitute/sting	Updated GridEngineJobRunner to return status RUNNING instead of PENDING when a job has been sent to GridEngine, even if it hasn't started.	2011-05-25 17:16:44 +00:00
test/org/broadinstitute/sting/queue	Minor update so the debug messages don't show temp files as chromosome 208799060637697164972	2011-05-26 22:56:33 +00:00