gatk3的最后一个经典版本3.8

Eric Banks 2a935374f3 Merge pull request #242 from broadinstitute/vrr_N_cigar_error_and_override_option ... Reads with N operator in CIGAR now result in a User exception. Option to filter them out is provided.		2013-06-10 08:46:15 -07:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	This commit addresses JIRA issue GSA-948: Prevent users from doing the wrong thing with RNA-Seq data and the GATK.	2013-06-10 10:44:42 -04:00
public	This commit addresses JIRA issue GSA-948: Prevent users from doing the wrong thing with RNA-Seq data and the GATK.	2013-06-10 10:44:42 -04:00
settings	Rev picard, sam-jdk, tribble, and variant to version 1.91.1453	2013-05-07 14:21:15 -04:00
.gitignore	Detect stuck lock-acquisition calls, and disable file locking for tests	2013-04-24 22:49:02 -04:00
build.xml	Restore scala compilation by default in build.xml	2013-05-31 11:28:29 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00