Mark DePristo 2a86b81a3f Initial version of clean, fast formatting routines built dynamically from a VCF header ... -- BCFFieldEncoder and writers divide up the task of formatting values (atomic or vector, ints, strings, floats, etc) from the task of writing these out at the sites or genotypes level. -- Allows us to create efficient encoders for specific combinations of header fields, such as int[] encoded values with exactly 3 values -- Currently only used for INFO fields, but subsequent commit will include optimized genotype field encoder -- Allowed us to naturally support encoding of lists of strings -- Bugfixes in VariantContextUtils introduced in genotype -> genotypebuilder conversion -- Fixes for integration test failures -- Enabling contig updates -- WalkerTest now prints out relative paths where possible to make cut/paste/run easier		2012-06-14 16:42:30 -04:00
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net/sf	Merged bug fix from Stable into Unstable	2012-02-13 16:37:11 -05:00
org/broadinstitute/sting	Initial version of clean, fast formatting routines built dynamically from a VCF header	2012-06-14 16:42:30 -04:00