kshakir 6b1b4931e7 Added FCP VE stratifications for Filter, FunctionalClass, and Stratification as requested by Corin. ... Feeding FCP UG the bam list instead of individual bams to cut scatter gather time from O(m^100) as measured by Chris to O(m^1). Fixed NPE when eval values aren't found in PipelineTests. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5694 348d0f76-0448-11de-a6fe-93d51630548a		2011-04-27 02:29:56 +00:00
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BatchMerge.q	BatchMerge - AlleleVCF --> AllelesVCF, this (combined with Eric's fix) will solve James P.'s forum issue.	2011-04-15 22:03:16 +00:00
FullCallingPipeline.q	Added FCP VE stratifications for Filter, FunctionalClass, and Stratification as requested by Corin.	2011-04-27 02:29:56 +00:00
MultiFullCallingPipeline.scala	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
recalibrate.scala	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
wgs.q	Updates Omni path and removes a typo	2011-04-21 04:17:13 +00:00