carneiro a93a9ac663 adding gold standard (full coverage) to the variant eval analysis output. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5721 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-02 16:29:11 +00:00
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carneiro	adding gold standard (full coverage) to the variant eval analysis output.	2011-05-02 16:29:11 +00:00
chartl	Queue graph time is currently of O(n^m) where n = num jobs, m = num unique base files. This script therefore was running in order 1200^16, which I don't think would finish before the heat death of the universe. For now, push down the number of files to 1 and gather them outside of Queue, once I've fixed up scatter-gather in core, outputs can be uncommented.	2011-04-21 12:56:25 +00:00
delangel	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
depristo	GATK Resource bundle, latest version (now with b37 -> b36 support). Oneoff scala script that assesses chip coverage of calls	2011-04-27 22:01:36 +00:00
fromer	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
hanna	Incorporating Khalid's feedback.	2011-04-08 16:22:49 +00:00
kshakir	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
rpoplin	Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output.	2011-03-24 14:03:51 +00:00
QTools.q	Generalized association is now working. Output is in a horrific format. Implementation of T-testing. Improvements are to look for classes dynamically (a la VariantEval/VariantAnnotator), beautify output, and do optimizations where they exist.	2011-03-01 01:23:37 +00:00