rpoplin 3224bbe750 New visualization output for VQSR. It creates the R script file on the fly and then runs Rscript on it. Adding 1000G Project consensus code. First pass of having VQSR work with missing data by marginalizing over the missing dimension for that data point (thanks Chris and Bob for ideas). Updated math functions to use apache math commons instead of approximations from wikipedia. New parameters available for the priors based on further reading in Bishop and looking at the new visualizations. Updated integration test to use more modern files. Updated MDCP to use new best practices w.r.t. annotations. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5723 348d0f76-0448-11de-a6fe-93d51630548a		2011-05-02 19:14:42 +00:00
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qscript	New visualization output for VQSR. It creates the R script file on the fly and then runs Rscript on it. Adding 1000G Project consensus code. First pass of having VQSR work with missing data by marginalizing over the missing dimension for that data point (thanks Chris and Bob for ideas). Updated math functions to use apache math commons instead of approximations from wikipedia. New parameters available for the priors based on further reading in Bishop and looking at the new visualizations. Updated integration test to use more modern files. Updated MDCP to use new best practices w.r.t. annotations.	2011-05-02 19:14:42 +00:00
src/org/broadinstitute/sting	Fixed a bug where empty intervals were being scattered zero ways parallel. Would be awesome to use the GAE at some point.	2011-04-29 22:42:48 +00:00
test/org/broadinstitute/sting/queue	Fixed a bug where empty intervals were being scattered zero ways parallel. Would be awesome to use the GAE at some point.	2011-04-29 22:42:48 +00:00