zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/java/test/org/broadinstitute/sting/gatk/walkers/variantutils
History
ebanks ab9ffb1a74 Epic failure on the lazy loading of genotypes: if the input VCF had its samples unsorted and we used a walker that didn't require genotypes, then we would sort the samples but not load genotypes (and therefore the genotypes wouldn't match the samples anymore). Added simple integration test to cover this case. 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5711 348d0f76-0448-11de-a6fe-93d51630548a
 		2011-04-29 16:03:45 +00:00
..
CombineVariantsIntegrationTest.java CalculateChromosomeCounts() now only calculates AC, AF, and AN when there are genotypes. Can now combine variants with headers that differ in only whether a field is a integer or a float. Updated CombineVariants integrationtest, as incorrect AC values where being calculated in the previous GS outputs. 2011-03-06 19:25:52 +00:00
CombineVariantsUnitTest.java Switched the CVUnitTest broken info from an Integer to a String since as of r5383 Integers are no longer broken when converted to Floats. 2011-03-07 16:33:14 +00:00
LiftoverVariantsIntegrationTest.java Epic failure on the lazy loading of genotypes: if the input VCF had its samples unsorted and we used a walker that didn't require genotypes, then we would sort the samples but not load genotypes (and therefore the genotypes wouldn't match the samples anymore). Added simple integration test to cover this case. 2011-04-29 16:03:45 +00:00
SelectVariantsIntegrationTest.java Remove the extra trailing tab at the end of the VCF ## header line. Unfortunately, this meant updating every freaking integration test. 2010-12-08 17:22:29 +00:00
VCFStreamingIntegrationTest.java Updated md5 for testVCFStreamingChain to reflect latest changes to VariantEval. 2011-02-06 21:22:05 +00:00
ValidateVariantsIntegrationTest.java Changing testing framework from junit -> testng, for its enhanced configurability. 2010-11-01 21:31:44 +00:00
VariantsToTableIntegrationTest.java VariantsToTable now blows up by default if you ask for a field that isn't present in a record. 2011-04-14 14:42:43 +00:00
VariantsToVCFIntegrationTest.java Moving VariantsToVCF to the proper directory; removing the oneoffs CG indel converter in preparation for a ligitimate CG variant Feature class in the works. 2011-02-07 05:21:01 +00:00