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arguments
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A significant refactoring of the ROD system, done largely to simplify the process of
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2010-12-31 04:52:22 +00:00 |
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contexts/variantcontext
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Remove the extra trailing tab at the end of the VCF ## header line. Unfortunately, this meant updating every freaking integration test.
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2010-12-08 17:22:29 +00:00 |
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datasources
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A fix for Marian Thieme's NPE in the new sharding system.
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2011-04-21 19:47:14 +00:00 |
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executive
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Changing testing framework from junit -> testng, for its enhanced configurability.
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2010-11-01 21:31:44 +00:00 |
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filters
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Convert GenomeLocParser into an instance variable. This change is required
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2010-11-10 17:59:50 +00:00 |
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iterators
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More descriptive error when VerifyingSamIterator hits an inconsistent alignment. Also updated
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2011-03-03 03:55:24 +00:00 |
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refdata
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Oops...forgot to commit the changes that allow primitive VCF streaming.
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2011-01-12 21:54:51 +00:00 |
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report
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Added a utility method to retrieve the contig lengths for WG chunking.
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2011-04-20 19:22:21 +00:00 |
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traversals
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Fix requested by Lee Lichtenstein: first check to see whether it's time for
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2011-04-20 03:22:48 +00:00 |
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walkers
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Continuing the epic fail, some of our existing integration tests were wrong because of the lazy loading failure.
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2011-04-29 17:54:41 +00:00 |
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CommandLineExecutableUnitTest.java
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Fix for bug GSA-441: BAM file list with blank lines gives a confusing error
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2011-04-01 15:04:35 +00:00 |
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GenomeAnalysisEngineUnitTest.java
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Fix for bug GSA-449: Intervals that are not in GATK format are not validated
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2011-04-27 18:12:10 +00:00 |
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WalkerManagerUnitTest.java
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Changing testing framework from junit -> testng, for its enhanced configurability.
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2010-11-01 21:31:44 +00:00 |
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