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gatk-3.8/java/test/org/broadinstitute/sting/gatk/walkers
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ebanks 34969f304c Adding dbsnp to all UG performance tests 
git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3347 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-05-11 15:48:05 +00:00
..
annotator Heads up everyone: 2010-04-09 05:37:25 +00:00
concordance Fixing/cleaning up the vcf merge util 2010-03-19 15:13:32 +00:00
coverage Walkers and integration tests that calculate and compare callable bases 2010-05-07 21:33:47 +00:00
fasta Adding GeliText tribble track as the first enabled Tribble track. This mean 'Variants' is no longer valid for a ROD type, use GeliText instead. I've updated all the references in the codebase. 2010-04-29 22:50:17 +00:00
filters Moving VariantFiltration over to use VariantContext. 2010-03-19 18:35:23 +00:00
genotyper Adding dbsnp to all UG performance tests 2010-05-11 15:48:05 +00:00
indels Added PG tag to bam header to let people know it's been cleaned. 2010-04-30 17:30:30 +00:00
recalibration Fixing the performance tests: we need to catch the RuntimeException (not samtools' RuntimeIOExcpetion). Also, CountCovariates doesn't need the catch. 2010-04-19 14:28:12 +00:00
sequenom Redoing the conversion to VariantContext: instead of walkers passing in a ref allele, they pass in the ref context and the adaptors create the allele. This is the right way of doing it. 2010-04-19 05:47:17 +00:00
varianteval VE integration test 2010-05-07 13:58:25 +00:00
DepthOfCoverageIntegrationTest.java Execs() temporarily disabled after removal of bam file. New tests forthcoming. 2010-04-15 20:11:56 +00:00
PileupWalkerIntegrationTest.java Now that we changed how deletions are represented, got to update MD5... 2009-12-30 22:00:58 +00:00
PrintReadsWalkerUnitTest.java A long overdue correction; all unit tests now end in 'UnitTest'. This was something we wanted to do for a while, and now with the performance tests coming, it was a good time to clean-up. Please label any new test appropriately: *UnitTest and *IntegrationTest are the two valid file name patterns for tests. 2010-04-08 06:14:15 +00:00
VariantsToVCFIntegrationTest.java Adding GeliText tribble track as the first enabled Tribble track. This mean 'Variants' is no longer valid for a ROD type, use GeliText instead. I've updated all the references in the codebase. 2010-04-29 22:50:17 +00:00