gatk3的最后一个经典版本3.8

David Roazen 2a7f55ae45 Further run_parallel_tests.sh quick fixes ... -Apparently the version of "basename" on gsa4 lacks the -s option...		2013-02-28 17:40:20 -05:00
licensing	Removing the symlink from the private license file	2013-02-09 12:57:44 -05:00
protected	Merge pull request #73 from broadinstitute/eb_remove_nested_hashmap_GSA-732	2013-02-28 05:19:56 -08:00
public	Merge pull request #75 from broadinstitute/eb_missing_rg_error_GSA-407	2013-02-28 05:20:39 -08:00
settings	Haplotype/Allele based optimizations for the HaplotypeCaller that knock off nearly 20% of the total runtime (multi-sample).	2013-02-21 10:14:11 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Experimental script to run tests using class-level parallelism on the farm	2013-02-28 16:51:58 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Brought all of ReduceReads to fastutils	2013-02-23 22:53:23 -05:00