hanna a95302fe98 Single alignment generator, another checkpoint. Does generate single alignments, but some of the data still ... needs to plumbed through and it may leak memory. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2095 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-19 21:20:03 +00:00
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Makefile	Repackage the aligner for better partitioning. The C aligner, for example, is now	2009-11-13 22:55:27 +00:00
build_linux.sh	Checkpoint. Add first phase of single alignment interface.	2009-11-19 19:03:43 +00:00
build_mac.sh	BWA/C changes have arrived in svn repository. Remove temporary storage from Sting repository.	2009-11-11 16:48:21 +00:00
bwa_gateway.cpp	Single alignment generator, another checkpoint. Does generate single alignments, but some of the data still	2009-11-19 21:20:03 +00:00
bwa_gateway.h	Single alignment generator, another checkpoint. Does generate single alignments, but some of the data still	2009-11-19 21:20:03 +00:00
org_broadinstitute_sting_alignment_bwa_c_BWACAligner.cpp	Single alignment generator, another checkpoint. Does generate single alignments, but some of the data still	2009-11-19 21:20:03 +00:00
org_broadinstitute_sting_alignment_bwa_c_BWACAligner.h	Single alignment generator, another checkpoint. Does generate single alignments, but some of the data still	2009-11-19 21:20:03 +00:00