gatk3的最后一个经典版本3.8

Mark DePristo 2a42b47e4a Massive expansion of ActiveRegionTraversal unit tests, resulting in several bugfixes to ART ... -- UnitTests now include combinational tiling of reads within and spanning shard boundaries -- ART now properly handles shard transitions, and does so efficiently without requiring hash sets or other collections of reads -- Updating HC and CountReadsInActiveRegions integration tests		2013-01-16 15:30:00 -05:00
licensing	Cleaning CRLF terminations in the licenses	2013-01-10 17:06:29 -05:00
protected/java	Massive expansion of ActiveRegionTraversal unit tests, resulting in several bugfixes to ART	2013-01-16 15:30:00 -05:00
public	Massive expansion of ActiveRegionTraversal unit tests, resulting in several bugfixes to ART	2013-01-16 15:30:00 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Updating Queue maven version to 0.0.2	2013-01-10 13:46:49 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00