hanna 29c129aced Added very primitive read fishing walker with lots of hard coding. Fixed ... bugs encountered when testing read fishing in Ecoli. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2496 348d0f76-0448-11de-a6fe-93d51630548a		2010-01-04 00:54:57 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Added very primitive read fishing walker with lots of hard coding. Fixed	2010-01-04 00:54:57 +00:00
test/org/broadinstitute/sting	Updated the min mapping quality and min base quality defaults to be 10 in both cases (and updated all integration tests) as suggested by Mark.	2010-01-03 21:31:04 +00:00