gatk3的最后一个经典版本3.8

David Roazen 292037dfda Rev picard, sam-jdk, and tribble ... This is a necessary prerequisite for the org.broadinstitute.variant migration. -Picard and sam-jdk go from version 1.67.1197 to 1.84.1337 -Picard-private goes from version 2375 to 2662 -Tribble goes from version 119 to 1.84.1337 -RADICALLY trimmed down the list of classes we extract from Picard-private (jar goes from 326993 bytes to 6445 bytes!)		2013-02-01 13:51:30 -05:00
licensing	Refrain from pushing symlinks into the repo... not all filesystems treat it correctly	2013-01-22 15:18:19 -07:00
protected/java	Intermediate commit of new bubble assembly graph traversal algorithm for the HaplotypeCaller. Adding functionality for a path from an assembly graph to calculate its own cigar string from each of the bubbles instead of doing a massive Smith-Waterman alignment between the path's full base composition and the reference.	2013-01-31 11:32:19 -05:00
public	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
settings	Rev picard, sam-jdk, and tribble	2013-02-01 13:51:30 -05:00
.gitignore	Fixing the licensing scripts	2013-01-26 13:42:49 -05:00
build.xml	Move AWS keys to a resources subdirectory within the phonehome package	2013-01-31 11:56:34 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	ReadBackedPileup cleanup	2013-01-11 15:17:18 -05:00