Mauricio Carneiro 291d8c7596 Fixed HardClipping and Interval containment ... * Hard clipping was wrongfully hard clipping unmapped reads while soft clipping then hard clipping mapped reads. Now we throw exception if we try to hard/soft clip unmapped reads and use the soft->hard clip procedure fore every mapped read. * Interval containment needed a <= and >= to make sure it caught the borders right.		2011-08-14 14:54:33 -04:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Fixed HardClipping and Interval containment	2011-08-14 14:54:33 -04:00
test	Removed a public -> private dependency in our test suite.	2011-08-12 17:29:10 -04:00