depristo d97ed3e080 Comments for Mauricio ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5275 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-18 16:58:34 +00:00
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core	Data Processing Pipeline: local indel realignment, mark duplicates and BQSR. Done.	2011-02-16 17:22:30 +00:00
examples	Moved the maximum number of intervals check from FCP to the Queue core so that scatter gather will no longer blow up if you specify a scatter count that is too high.	2011-01-28 23:33:58 +00:00
lib	Thanks to mark: VCFInfoToTable removed in favor of a more flexible walker. Slight change to the argument structure of the walker to make it play more nicely with Queue: the field list parsing is pushed into the command line system (e.g. the variable is exposed as a List<String> and not a String, so Queue doesn't have to join a list into a string only to have it broken out again. This also allows the user to specify -F field1 -F field2 -F field3 if he/she so desires.	2010-12-15 03:33:36 +00:00
oneoffs	Comments for Mauricio	2011-02-18 16:58:34 +00:00
playground	Evaluates within standard target and expanded target separately.	2011-02-17 23:04:24 +00:00