ebanks 0e10359a5e Okay, finished up the ability to cap a base's qual by its read's mapping quality. ... This is experimental - I have not tested its performance on SNP calling, or even played around with it. If you want to test it out, go nuts. But don't come running to me if your results are not good. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3282 348d0f76-0448-11de-a6fe-93d51630548a		2010-04-30 16:58:30 +00:00
..
config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Okay, finished up the ability to cap a base's qual by its read's mapping quality.	2010-04-30 16:58:30 +00:00
test/org/broadinstitute/sting	Changes to the Unified Genotyper's arguments:	2010-04-30 16:44:24 +00:00