David Roazen 5e288136e0 Added unit tests for the SnpEff codec, and made minor adjustments to the codec itself.		2011-08-08 16:51:43 -04:00
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hapmap	Fixing broken paths to the testdata directory throughout the codebase.	2011-06-29 17:36:47 -04:00
snpEff	Added unit tests for the SnpEff codec, and made minor adjustments to the codec itself.	2011-08-08 16:51:43 -04:00
vcf	Instead of having the padded reference base be some hackish attribute it is now an actual variable in the Variant Context class. More importantly, we now always require that it be present when padding is necessary - and validate as such upon construction of the VC. This cleans up the interface significantly because we no longer require that a reference base be passed in when writing a VC/VCF record.	2011-08-03 11:00:36 -04:00