hanna 28ae53d796 Merging the best parts of Mark's fix for the O(n^2) algorithm and my ... concurrently-written fix for the same. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5520 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-26 13:32:23 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Merging the best parts of Mark's fix for the O(n^2) algorithm and my	2011-03-26 13:32:23 +00:00
test	Now uses the NO_HEADER option to avoid breaking MD5s due to changes in GATKArgumentCollection	2011-03-26 12:00:37 +00:00