hanna 28a5a177ce Very crude implementation of writing BAM 'schedules' to disk rather that 'meta- ... indexes'. Not yet elegant, but proves that it circumvents the performance issues associated with the meta-index. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5454 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-16 21:48:47 +00:00
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src	Very crude implementation of writing BAM 'schedules' to disk rather that 'meta-	2011-03-16 21:48:47 +00:00
test	Removing some debug code from VQSRv2. VariantEval can now be stratified by contig with -ST Contig. New hidden option in CombineVariants for overlapping records to take the info fields from the record with the highest AC (while still updating AC/AN/AF correctly) instead of dropping info fields which aren't exactly the same.	2011-03-15 21:28:10 +00:00