kshakir 79725f2d9c Excluding the QFunction log files from the set of files to delete on completion. ... When a QGraph is empty displaying a warning instead of crashing with an JGraph internal assertion error. Cleaned up code using the Log4J root logger and explicitly talking to a logger for Sting. When integration tests are run detecting that the logger has already been setup so that messages aren't logged twice. Updated from Ivy 2.2.0-rc1 to 2.2.0. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4707 348d0f76-0448-11de-a6fe-93d51630548a		2010-11-18 20:22:01 +00:00
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org/broadinstitute/sting/queue	Excluding the QFunction log files from the set of files to delete on completion.	2010-11-18 20:22:01 +00:00
BaseTransitionTableCalculator.scala	Scala walkers can now be build and run like any other walker in the GATK. Added the getUrlsForClasspath to PackageUtils, the Reflections package isn't getting the manifest files from jars in the classpath, and so we weren't seeing any walkers outside of the GenomeAnalysisTK.jar.	2009-11-02 06:02:41 +00:00
HelloWorld.scala	support for scala walkers	2009-08-28 00:15:01 +00:00
ScalaCountLoci.scala	Scala walkers can now be build and run like any other walker in the GATK. Added the getUrlsForClasspath to PackageUtils, the Reflections package isn't getting the manifest files from jars in the classpath, and so we weren't seeing any walkers outside of the GenomeAnalysisTK.jar.	2009-11-02 06:02:41 +00:00