ebanks 2838629724 -VCF writer now checks whether the allele frequency has been set before trying to write it out. ... -Renamed methods to be more consistent. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2214 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-02 16:25:32 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	-VCF writer now checks whether the allele frequency has been set before trying to write it out.	2009-12-02 16:25:32 +00:00
test/org/broadinstitute/sting	fixes for VariantAnnotations and second bases. Misc. removal of failing (and unstable) integration tests that require rereview	2009-12-02 15:41:35 +00:00