hanna 282f1d88b8 Make the operation 'read from the iterator and place on the queue' atomic with respect to hasNext(), next(). ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@513 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-23 20:16:26 +00:00
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dataSources	A lot of changes to support by-read sharding and some from debugging of the by loci traversals	2009-04-23 19:03:14 +00:00
executive	Oops...omitted walker.initialize().	2009-04-23 17:35:28 +00:00
iterators	Make the operation 'read from the iterator and place on the queue' atomic with respect to hasNext(), next().	2009-04-23 20:16:26 +00:00
refdata	updated interface	2009-04-21 21:07:20 +00:00
traversals	TraverseByLoci / TraverseByLociByReference suffered from the same sam-triggered off-by-one (?) bug as TraverseByReference; it was just less obvious here because these versions don't shard.	2009-04-22 15:48:20 +00:00
walkers	Make PrintLocusContextWalker less verbose.	2009-04-22 18:28:02 +00:00
GenomeAnalysisTK.java	trivial checking / flagging issues to enable testing of merging iterator performance	2009-04-17 03:11:59 +00:00
LocusContext.java	Added lots of assertions to check for problems.	2009-04-14 00:55:19 +00:00
WalkerManager.java	Refactor common functionality out of WalkerManager and into JVMUtils and PathUtils. Add support for loading walkers from a jar.	2009-03-30 23:20:55 +00:00