hanna 275707f5f6 Data structure for counts, to isolate the user from wonky 'sometimes counts are cumulative, other times base-by-base' gotchas. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1592 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-11 20:53:24 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting	Data structure for counts, to isolate the user from wonky 'sometimes counts are cumulative, other times base-by-base' gotchas.	2009-09-11 20:53:24 +00:00
test/org/broadinstitute/sting	So, the VCF spec allows for an optional meta field in the header representing the date. However, using this field means that integration tests run on the vcf file will fail the MD5 test (which is what happened to the VariantFiltration test this morning after working just fine yesterday).	2009-09-10 14:28:43 +00:00