gatk-3.8/java/src/org/broadinstitute/sting/utils/cmdLine
hanna 5eac510b2f Refactor the code I gave Eric yesterday to output command line arguments.
Convert it from a completely wonky solution to a slightly less wonky solution
that will work in more cases.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2310 348d0f76-0448-11de-a6fe-93d51630548a
2009-12-10 18:57:54 +00:00
..
Argument.java Argument validation. 2009-05-07 20:28:56 +00:00
ArgumentCollection.java added the argument collection annotation for situations where fields in a command line args have embedded fields that should be checked for command line args 2009-05-09 06:59:17 +00:00
ArgumentDefinition.java General-purpose management of output streams. 2009-08-23 00:56:02 +00:00
ArgumentDefinitionGroup.java Move some files around to reflect our growing help infrastructure. 2009-12-07 19:23:12 +00:00
ArgumentDefinitions.java Move some files around to reflect our growing help infrastructure. 2009-12-07 19:23:12 +00:00
ArgumentException.java @Required / @Allows flags for main arguments. 2009-05-19 23:26:17 +00:00
ArgumentMatches.java Better integrate the @ArgumentCollection into the command-line argument parser. Walkers can now specify their own @ArgumentCollections. Also cleaned up a bit of the CommandLineProgram template method pattern to minimize duplicate code. 2009-09-29 22:23:19 +00:00
ArgumentSource.java Better integrate the @ArgumentCollection into the command-line argument parser. Walkers can now specify their own @ArgumentCollections. Also cleaned up a bit of the CommandLineProgram template method pattern to minimize duplicate code. 2009-09-29 22:23:19 +00:00
ArgumentTypeDescriptor.java Better explanation in the exception being thrown. 2009-12-09 03:59:36 +00:00
CommandLineProgram.java Move some files around to reflect our growing help infrastructure. 2009-12-07 19:23:12 +00:00
CommandLineUtils.java Refactor the code I gave Eric yesterday to output command line arguments. 2009-12-10 18:57:54 +00:00
ParsingEngine.java Refactor the code I gave Eric yesterday to output command line arguments. 2009-12-10 18:57:54 +00:00
ParsingMethod.java Disable support for short name values directly abutting their arguments. 2009-05-17 16:09:32 +00:00
package.html Package level documentation -- helps new users get acclimated to the codebase more quickly. 2009-06-17 16:27:48 +00:00