gatk3的最后一个经典版本3.8

Eric Banks 264cc9e78d Resolve protected->public dependencies for BQSR by wrapping the BQSR-specific arguments in a new class. ... Instead of the GATK Engine creating a new BaseRecalibrator (not clean), it just keeps track of the arguments (clean). There are still some dependency issues, but it looks like they are related to Ami's code. Need to look into it further.		2013-01-08 16:23:29 -05:00
licensing	Final final final version of the license.	2012-07-20 18:00:02 -04:00
protected/java	Resolve protected->public dependencies for BQSR by wrapping the BQSR-specific arguments in a new class.	2013-01-08 16:23:29 -05:00
public	Resolve protected->public dependencies for BQSR by wrapping the BQSR-specific arguments in a new class.	2013-01-08 16:23:29 -05:00
settings	Final r119 tribble jar	2012-11-02 14:30:33 -04:00
.gitignore	adding some directories to gitignore	2012-09-27 11:09:41 -04:00
build.xml	Re-enabling contracts in tests in build.xml	2013-01-02 11:29:25 -05:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
ivy.xml	Use build jars in test classpaths by default	2012-11-28 22:57:04 -05:00