gatk3的最后一个经典版本3.8

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Laura Gauthier 25b8ba45f4 More allele-specific annotations: AS_QD and AS_InbreedingCoeff Grouped default output annotations to keep them from getting dropped when -A is specified; addresses #918 Also refactored code shared by ExcessHet and InbreedingCoeff		2015-11-09 16:38:31 -05:00
licensing	Updated licenses for 2015	2015-08-06 15:23:11 -04:00
protected	More allele-specific annotations: AS_QD and AS_InbreedingCoeff	2015-11-09 16:38:31 -05:00
public	More allele-specific annotations: AS_QD and AS_InbreedingCoeff	2015-11-09 16:38:31 -05:00
settings/helpTemplates	Numerous doc fixes; mostly formatting and clarifications	2015-05-03 00:28:46 +02:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Added faster built executable, non-packaged jars.	2014-11-05 00:30:46 +08:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Using `SamIndexes.asBaiSeekableStreamOrNull()` to support `.cram.crai`.	2015-09-14 12:20:36 -04:00

The Genome Analysis Toolkit