Karthik Gururaj f1c772ceea Same log message as before - forgot -a option ... 1. Moved computeLikelihoods from PairHMM to native implementation 2. Disabled debug - debug code still left (hopefully, not part of bytecode) 3. Added directory PairHMM_JNI in the root which holds the C++ library that contains the PairHMM AVX implementation. See PairHMM_JNI/JNI_README first		2014-01-16 21:40:04 -08:00
..
alignment	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
commandline	Add ability to specify min/max required/recommended values for numeric arguments in the @Argument annotation	2013-12-18 18:09:08 -05:00
gatk	Better documentation for ReadClippingStats walker	2014-01-01 14:26:26 -05:00
jna	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
queue	fix a (ugly) weird error from last commit that changed all the scala files to end with MoleculoPipeline.scala	2013-11-18 11:44:24 -05:00
tools	New VCF engine arguments to specify an alternate IndexCreator	2013-12-03 13:31:02 -05:00
utils	Same log message as before - forgot -a option	2014-01-16 21:40:04 -08:00