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gatk-3.8/PairHMM_JNI
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Karthik Gururaj 25aecb96e0 Added support for dynamic selection between AVX and un-vectorized C++, 
still to include SSE code from Mohammad.
Debug flags turned on in this commit.
 		2014-01-18 11:07:23 -08:00
..
.gitignore Same log message as before - forgot -a option 2014-01-16 21:40:04 -08:00
JNI_README Same log message as before - forgot -a option 2014-01-16 21:40:04 -08:00
Makefile Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
avx_function_instantiations.cc Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
avx_function_prototypes.h Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
baseline.cc Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
define-double.h Renamed directory 2014-01-16 20:28:50 -08:00
define-float.h Renamed directory 2014-01-16 20:28:50 -08:00
headers.h Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
hmm_mask.cc Renamed directory 2014-01-16 20:28:50 -08:00
libJNILoglessPairHMM.so Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.cc Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.h Renamed directory 2014-01-16 20:28:50 -08:00
pairhmm-1-base.cc Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
pairhmm-template-kernel.cc Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
pairhmm-template-main.cc Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
run.sh Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
shift_template.c Renamed directory 2014-01-16 20:28:50 -08:00
template.h Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
utils.cc Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00
utils.h Added support for dynamic selection between AVX and un-vectorized C++, 2014-01-18 11:07:23 -08:00