gatk3的最后一个经典版本3.8

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Valentin Ruano-Rubio 258b2bce28 Fix loss of key alternative haplotypes due to a change on threading start policy required when recovering dangling heads. Story: - https://www.pivotaltracker.com/story/show/67601310 Change: - Unless recover-danging-heads is active, the threading starting location policy is the original one. i.e. just at already existing unique kmer vertices. Tests: - HaplotypeCallerIntegrationTest#testMissingKeyAlternativeHaplotypesBugFix		2014-03-29 22:40:26 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Fix loss of key alternative haplotypes due to a change on threading start policy required when recovering dangling heads.	2014-03-29 22:40:26 -04:00
public	Fix for dropping of reference sample depth in the DP annotation.	2014-03-24 14:01:50 -04:00
settings/helpTemplates	Replaced local drmaa and Jama artifacts with versions from maven central.	2014-02-22 01:21:35 +08:00
.gitignore	Adding the external example to the build.	2014-02-15 01:26:07 +08:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests	2014-03-10 21:24:03 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/