Mauricio Carneiro 250ffd2ad7 Merged bug fix from Stable into Unstable		2012-08-08 15:50:07 -04:00
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bqsr	Smoothing in the BQSR bins should be one error observation and one non-error observation.	2012-07-26 13:59:02 -04:00
compression/reducereads	Fixing ReduceReads downsampling bug -- downsampled reads were not being excluded from the read window, causing them to trail back and get caught by the sliding window exception	2012-08-08 15:49:31 -04:00
genotyper	Update -maxAlleles argument in integration tests	2012-08-06 22:48:04 -04:00
haplotypecaller	Updating HaplotypeCaller integration tests	2012-08-06 12:02:19 -04:00