45 lines
1.2 KiB
C++
45 lines
1.2 KiB
C++
#ifndef PAIRHMM_UTIL_H
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#define PAIRHMM_UTIL_H
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#include "template.h"
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template<class T>
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std::string to_string(T obj)
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{
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std::stringstream ss;
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std::string ret_string;
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ss.clear();
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ss << std::scientific << obj;
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ss >> ret_string;
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ss.clear();
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return ret_string;
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}
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void debug_dump(std::string filename, std::string s, bool to_append, bool add_newline=true);
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int read_mod_testcase(std::ifstream& fptr, testcase* tc, bool reformat=false);
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bool is_avx_supported();
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bool is_sse42_supported();
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extern float (*g_compute_full_prob_float)(testcase *tc, float *before_last_log);
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extern double (*g_compute_full_prob_double)(testcase *tc, double* before_last_log);
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void debug_dump(std::string filename, std::string s, bool to_append, bool add_newline);
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template<class NUMBER>
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NUMBER compute_full_prob(testcase *tc, NUMBER *before_last_log=0);
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double getCurrClk();
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uint64_t get_time(struct timespec* x=0);
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uint64_t diff_time(struct timespec& prev_time);
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//bit 0 is sse4.2, bit 1 is AVX
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enum ProcessorCapabilitiesEnum
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{
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SSE42_CUSTOM_IDX=0,
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AVX_CUSTOM_IDX
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};
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#define ENABLE_ALL_HARDWARE_FEATURES 0xFFFFFFFFFFFFFFFFull
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uint64_t get_machine_capabilities();
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void initialize_function_pointers(uint64_t mask=ENABLE_ALL_HARDWARE_FEATURES);
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void do_compute(char* filename);
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#endif
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