..
VectorPairHMM
Updated licenses for 2015
2015-08-06 15:23:11 -04:00
c
After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.
2014-05-19 17:36:41 -04:00
chainFiles
The contig is named MT not M in b36. Delivers PT68890442.
2014-04-08 10:03:47 -04:00
doc
Updated readme in public/doc to just point to the website
2015-03-12 11:52:48 -04:00
external-example
Updated licenses for 2015
2015-08-06 15:23:11 -04:00
gatk-engine
Using `SamIndexes.asBaiSeekableStreamOrNull()` to support `.cram.crai`.
2015-09-14 12:20:36 -04:00
gatk-queue
Updated licenses for 2015
2015-08-06 15:23:11 -04:00
gatk-queue-extensions-generator
Updated licenses for 2015
2015-08-06 15:23:11 -04:00
gatk-queue-extensions-public
Update md5s for BAM header version change in Queue test output
2015-08-28 14:19:25 -04:00
gatk-root
Using `SamIndexes.asBaiSeekableStreamOrNull()` to support `.cram.crai`.
2015-09-14 12:20:36 -04:00
gatk-tools-public
Mask snps with --snpmask
2015-09-09 16:20:48 -04:00
gatk-utils
Using `SamIndexes.asBaiSeekableStreamOrNull()` to support `.cram.crai`.
2015-09-14 12:20:36 -04:00
gsalib
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
java /config
Refactored maven directories and java packages replacing "sting" with "gatk".
2014-05-19 17:36:39 -04:00
package-tests
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
perl
Fixing the liftover script to not require strict VCF header validation.
2013-11-07 09:02:17 -05:00
repo
Updated gatk so it compiles on java 8
2015-06-26 15:59:46 -04:00
src /main
Added faster built executable, non-packaged jars.
2014-11-05 00:30:46 +08:00
pom.xml
Update pom versions to mark the start of GATK 3.5 development
2015-05-15 00:44:54 -04:00
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